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» Visualization of Gene Combinations
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142
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CSB
2003
IEEE
15 years 10 months ago
An SVM-based Algorithm for Identification of Photosynthesis-specific Genome Features
This paper presents a novel algorithm for identification and functional characterization of “key” genome features responsible for a particular biochemical process of interest....
Gong-Xin Yu, George Ostrouchov, Al Geist, Nagiza F...
164
Voted
GECCO
2010
Springer
191views Optimization» more  GECCO 2010»
15 years 9 months ago
Initialization parameter sweep in ATHENA: optimizing neural networks for detecting gene-gene interactions in the presence of sma
Recent advances in genotyping technology have led to the generation of an enormous quantity of genetic data. Traditional methods of statistical analysis have proved insufficient i...
Emily Rose Holzinger, Carrie C. Buchanan, Scott M....
BMCBI
2010
118views more  BMCBI 2010»
15 years 5 months ago
Identifying differentially regulated subnetworks from phosphoproteomic data
Background: Various high throughput methods are available for detecting regulations at the level of transcription, translation or posttranslation (e.g. phosphorylation). Integrati...
Martin Klammer, Klaus Godl, Andreas Tebbe, Christo...
BMCBI
2010
105views more  BMCBI 2010»
15 years 5 months ago
Effects of scanning sensitivity and multiple scan algorithms on microarray data quality
Background: Maximizing the utility of DNA microarray data requires optimization of data acquisition through selection of an appropriate scanner setting. To increase the amount of ...
Andrew Williams, Errol M. Thomson
147
Voted
BMCBI
2010
106views more  BMCBI 2010»
15 years 5 months ago
TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays
Background: High-throughput genotyping microarrays assess both total DNA copy number and allelic composition, which makes them a tool of choice for copy number studies in cancer, ...
Henrik Bengtsson, Pierre Neuvial, Terence P. Speed