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GECCO
2007
Springer
258views Optimization» more  GECCO 2007»
15 years 8 months ago
TFBS identification by position- and consensus-led genetic algorithm with local filtering
Identification of Transcription Factor Binding Site (TFBS) motifs in multiple DNA upstream sequences is important in understanding the mechanism of gene regulation. This identific...
Tak-Ming Chan, Kwong-Sak Leung, Kin-Hong Lee
APN
2006
Springer
15 years 6 months ago
From Petri Nets to Differential Equations - An Integrative Approach for Biochemical Network Analysis
Abstract. We report on the results of an investigation into the integration of Petri nets and ordinary differential equations (ODEs) for the modelling and analysis of biochemical n...
David Gilbert, Monika Heiner
AIPS
2003
15 years 5 months ago
A Multi-Agent System-driven AI Planning Approach to Biological Pathway Discovery
As genomic and proteomic data is collected from highthroughput methods on a daily basis, subcellular components are identified and their in vitro behavior is characterized. Howev...
Salim Khan, William Gillis, Carl Schmidt, Keith De...
TREC
2004
15 years 5 months ago
Information Needs and Automatic Queries
Tarragon Consulting Corporation participated in the adhoc retrieval task of the TREC 2004 Genomics Track. We used a standard deployment of the K2 search engine from Verity, Inc. i...
Richard M. Tong
BIOINFORMATICS
2010
138views more  BIOINFORMATICS 2010»
15 years 4 months ago
Robust unmixing of tumor states in array comparative genomic hybridization data
Motivation: Tumorigenesis is an evolutionary process by which tumor cells acquire sequences of mutations leading to increased growth, invasiveness, and eventually metastasis. It i...
David Tolliver, Charalampos E. Tsourakakis, Ayshwa...