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BMCBI
2006
94views more  BMCBI 2006»
15 years 6 months ago
Genepi: a blackboard framework for genome annotation
Background: Genome annotation can be viewed as an incremental, cooperative, data-driven, knowledge-based process that involves multiple methods to predict gene locations and struc...
Stéphane Descorps-Declère, Danielle ...
164
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ISBI
2002
IEEE
16 years 7 months ago
Classifying convex sets for vessel detection in retinal images
We present a method to detect vessels in images of the retina. Instead of relying on pixel classification, as many detection algorithms do, we propose a more natural representatio...
Joes Staal, Stiliyan Kalitzin, Michael D. Abr&agra...
PPOPP
2010
ACM
16 years 3 months ago
Structure-driven optimizations for amorphous data-parallel programs
Irregular algorithms are organized around pointer-based data structures such as graphs and trees, and they are ubiquitous in applications. Recent work by the Galois project has pr...
Mario Méndez-Lojo, Donald Nguyen, Dimitrios...
EUROPAR
2007
Springer
16 years 19 days ago
Fine Tuning Algorithmic Skeletons
Abstract. Algorithmic skeletons correspond to a high-level programming model that takes advantage of nestable programming patterns to hide the complexity of parallel/distributed ap...
Denis Caromel, Mario Leyton
WABI
2007
Springer
133views Bioinformatics» more  WABI 2007»
16 years 17 days ago
RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound
Predicting the secondary structure of an RNA sequence is an important problem in structural bioinformatics. The general RNA folding problem, where the sequence to be folded may con...
Chunmei Liu, Yinglei Song, Louis W. Shapiro