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BMCBI
2010
178views more  BMCBI 2010»
14 years 10 months ago
Applications of a formal approach to decipher discrete genetic networks
Background: A growing demand for tools to assist the building and analysis of biological networks exists in systems biology. We argue that the use of a formal approach is relevant...
Fabien Corblin, Eric Fanchon, Laurent Trilling
BMCBI
2008
116views more  BMCBI 2008»
14 years 10 months ago
IgTM: An algorithm to predict transmembrane domains and topology in proteins
Background: Due to their role of receptors or transporters, membrane proteins play a key role in many important biological functions. In our work we used Grammatical Inference (GI...
Piedachu Peris, Damián López, Marcel...
BMCBI
2008
103views more  BMCBI 2008»
14 years 10 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik
BMCBI
2008
75views more  BMCBI 2008»
14 years 10 months ago
Re-searcher: a system for recurrent detection of homologous protein sequences
Background: Sequence searches are routinely employed to detect and annotate related proteins. However, a rapid growth of databases necessitates a frequent repetition of sequence s...
Valdemaras Repsys, Mindaugas Margelevicius, Ceslov...
CACM
2008
84views more  CACM 2008»
14 years 10 months ago
The emergence of a networking primitive in wireless sensor networks
The wireless sensor network community approached netabstractions as an open question, allowing answers to emerge with time and experience. The Trickle algorithm has become a basic...
Philip Levis, Eric A. Brewer, David E. Culler, Dav...
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