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WABI
2005
Springer
128views Bioinformatics» more  WABI 2005»
15 years 10 months ago
Algorithms for Imperfect Phylogeny Haplotyping (IPPH) with a Single Homoplasy or Recombination Event
Abstract. The haplotype inference (HI) problem is the problem of inferring 2n haplotype pairs from n observed genotype vectors. This is a key problem that arises in studying geneti...
Yun S. Song, Yufeng Wu, Dan Gusfield
FORMATS
2004
Springer
15 years 10 months ago
Learning of Event-Recording Automata
Abstract. We extend Angluin’s algorithm for on-line learning of regular languages to the setting of timed systems. We consider systems that can be described by a class of determi...
Olga Grinchtein, Bengt Jonsson, Martin Leucker
ICFEM
2009
Springer
15 years 2 months ago
Verifying Ptolemy II Discrete-Event Models Using Real-Time Maude
Abstract. This paper shows how Ptolemy II discrete-event (DE) models can be formally analyzed using Real-Time Maude. We formalize in Real-Time Maude the semantics of a subset of hi...
Kyungmin Bae, Peter Csaba Ölveczky, Thomas Hu...
3DIM
2011
IEEE
14 years 4 months ago
Visual Hull from Imprecise Polyhedral Scene
—We present a framework to compute the visual hull of a polyhedral scene, in which the vertices of the polyhedra are given with some imprecision. Two kinds of visual event surfac...
Peng He, Abbas Edalat
CIBCB
2007
IEEE
15 years 10 months ago
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...