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BMCBI
2007
180views more  BMCBI 2007»
15 years 6 months ago
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data
Background: The Affymetrix™ technology is nowadays a well-established method for the analysis of gene expression profiles in cancer research studies. However, changes in gene ex...
Davide Rambaldi, Barbara Felice, Viviane Praz, Phi...
BIBM
2009
IEEE
155views Bioinformatics» more  BIBM 2009»
16 years 24 days ago
Towards Reliable Isoform Quantification Using RNA-Seq Data
Background: In eukaryotes, alternative splicing often generates multiple splice variants from a single gene. Here weexplore the use of RNA sequencing (RNA-Seq) datasets to address...
Brian E. Howard, Steffen Heber
GECCO
2006
Springer
220views Optimization» more  GECCO 2006»
15 years 9 months ago
Comparing evolutionary algorithms on the problem of network inference
In this paper, we address the problem of finding gene regulatory networks from experimental DNA microarray data. We focus on the evaluation of the performance of different evoluti...
Christian Spieth, Rene Worzischek, Felix Streicher...
BMCBI
2007
166views more  BMCBI 2007»
15 years 6 months ago
How to decide which are the most pertinent overly-represented features during gene set enrichment analysis
Background: The search for enriched features has become widely used to characterize a set of genes or proteins. A key aspect of this technique is its ability to identify correlati...
Roland Barriot, David J. Sherman, Isabelle Dutour
SIAMIS
2010
123views more  SIAMIS 2010»
15 years 4 months ago
Numerical Algorithms for Polyenergetic Digital Breast Tomosynthesis Reconstruction
Digital tomosynthesis imaging is becoming increasingly significant in a variety of medical imaging applications. Tomosynthesis imaging involves the acquisition of a series of proj...
Julianne Chung, James G. Nagy, Ioannis Sechopoulos