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CPM
1999
Springer
92views Combinatorics» more  CPM 1999»
15 years 3 months ago
Physical Mapping with Repeated Probes: The Hypergraph Superstring Problem
We focus on the combinatorial analysis of physical mapping with repeated probes. We present computational complexity results, and we describe and analyze an algorithmic strategy. W...
Serafim Batzoglou, Sorin Istrail
ISCI
2010
111views more  ISCI 2010»
14 years 9 months ago
Effective vaccination policies
We present a framework for modeling the spread of pathogens throughout a population and generating policies that minimize the impact of those pathogens on the population. This fra...
L. Shaw, W. Spears, L. Billings, P. Maxim
PKDD
2009
Springer
120views Data Mining» more  PKDD 2009»
15 years 5 months ago
Variational Graph Embedding for Globally and Locally Consistent Feature Extraction
Existing feature extraction methods explore either global statistical or local geometric information underlying the data. In this paper, we propose a general framework to learn fea...
Shuang-Hong Yang, Hongyuan Zha, Shaohua Kevin Zhou...
BMCBI
2006
172views more  BMCBI 2006»
14 years 11 months ago
BioWarehouse: a bioinformatics database warehouse toolkit
Background: This article addresses the problem of interoperation of heterogeneous bioinformatics databases. Results: We introduce BioWarehouse, an open source toolkit for construc...
Thomas J. Lee, Yannick Pouliot, Valerie Wagner, Pr...
PODS
2009
ACM
130views Database» more  PODS 2009»
15 years 12 months ago
Secondary indexing in one dimension: beyond b-trees and bitmap indexes
Let be a finite, ordered alphabet, and consider a string x = x1x2 . . . xn n . A secondary index for x answers alphabet range queries of the form: Given a range [al, ar] , retu...
Rasmus Pagh, Srinivasa Rao Satti