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BIBE
2007
IEEE
191views Bioinformatics» more  BIBE 2007»
15 years 4 months ago
PANP - a New Method of Gene Detection on Oligonucleotide Expression Arrays
Abstract. Currently, the method most used for gene detection calls on Affymetrix oligonucleotide arrays is provided as part of the MAS5.0 software. The MAS method uses Wilcoxon sta...
Peter Warren, Deanne Taylor, Paolo G. V. Martini, ...
BMCBI
2007
135views more  BMCBI 2007»
14 years 9 months ago
Measuring similarities between gene expression profiles through new data transformations
Background: Clustering methods are widely used on gene expression data to categorize genes with similar expression profiles. Finding an appropriate (dis)similarity measure is crit...
Kyungpil Kim, Shibo Zhang, Keni Jiang, Li Cai, In-...
BMCBI
2010
154views more  BMCBI 2010»
14 years 7 months ago
Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation
Background: External stimulations of cells by hormones, cytokines or growth factors activate signal transduction pathways that subsequently induce a re-arrangement of cellular gen...
Andreas Kowarsch, Florian Blöchl, Sebastian B...
BMCBI
2006
125views more  BMCBI 2006»
14 years 9 months ago
Evaluating different methods of microarray data normalization
Background: With the development of DNA hybridization microarray technologies, nowadays it is possible to simultaneously assess the expression levels of thousands to tens of thous...
André Fujita, João Ricardo Sato, Leo...
BMCBI
2005
135views more  BMCBI 2005»
14 years 9 months ago
A robust two-way semi-linear model for normalization of cDNA microarray data
Background: Normalization is a basic step in microarray data analysis. A proper normalization procedure ensures that the intensity ratios provide meaningful measures of relative e...
Deli Wang, Jian Huang, Hehuang Xie, Liliana Manzel...