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NAR
2010
173views more  NAR 2010»
14 years 5 months ago
The Protein Naming Utility: a rules database for protein nomenclature
Generation of syntactically correct and unambiguous names for proteins is a challenging, yet vital task for functional annotation processes. Proteins are often named based on homo...
Johannes Goll, Robert Montgomery, Lauren M. Brinka...
BICOB
2011
Springer
13 years 11 months ago
Similarity and Prioritization of Disease Proteins using Path Length Measure
Semantic similarity measures have been used successfully and extensively in the biomedical research with various applications. As the biomedical ontologies, which form the main gro...
Anurag Nagar, Hisham Al-Mubaid
PPOPP
2012
ACM
13 years 6 months ago
Internally deterministic parallel algorithms can be fast
The virtues of deterministic parallelism have been argued for decades and many forms of deterministic parallelism have been described and analyzed. Here we are concerned with one ...
Guy E. Blelloch, Jeremy T. Fineman, Phillip B. Gib...
BMCBI
2008
101views more  BMCBI 2008»
14 years 11 months ago
Prediction of glycosylation sites using random forests
Background: Post translational modifications (PTMs) occur in the vast majority of proteins and are essential for function. Prediction of the sequence location of PTMs enhances the...
Stephen E. Hamby, Jonathan D. Hirst
BMCBI
2007
109views more  BMCBI 2007»
14 years 11 months ago
Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint
Background: Structural genomics initiatives were established with the aim of solving protein structures on a large-scale. For many initiatives, such as the Protein Structure Initi...
Russell L. Marsden, Tony A. Lewis, Christine A. Or...