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BMCBI
2010
128views more  BMCBI 2010»
14 years 11 months ago
VIGOR, an annotation program for small viral genomes
Background: The decrease in cost for sequencing and improvement in technologies has made it easier and more common for the re-sequencing of large genomes as well as parallel seque...
Shiliang Wang, Jaideep P. Sundaram, David Spiro
BMCBI
2006
103views more  BMCBI 2006»
14 years 11 months ago
Domain-based small molecule binding site annotation
Background: Accurate small molecule binding site information for a protein can facilitate studies in drug docking, drug discovery and function prediction, but small molecule bindi...
Kevin A. Snyder, Howard J. Feldman, Michel Dumonti...
BMCBI
2006
108views more  BMCBI 2006»
14 years 11 months ago
Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress
Background: In our previous studies, we found that the sites in prokaryotic genomes which are most susceptible to duplex destabilization under the negative superhelical stresses t...
Huiquan Wang, Craig J. Benham
BMCBI
2006
199views more  BMCBI 2006»
14 years 11 months ago
PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments
Background: Microarray technology has become a widely accepted and standardized tool in biology. The first microarray data analysis programs were developed to support pair-wise co...
Björn Usadel, Axel Nagel, Dirk Steinhauser, Y...
CORR
2006
Springer
113views Education» more  CORR 2006»
14 years 11 months ago
Combining typing and size constraints for checking the termination of higher-order conditional rewrite systems
In a previous work, the first author extended to higher-order rewriting and dependent types the use of size annotations in types, a termination proof technique called type or size ...
Frédéric Blanqui, Colin Riba