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BMCBI
2011
14 years 6 months ago
Hierarchical graphs for rule-based modeling of biochemical systems
Background: In rule-based modeling, graphs are used to represent molecules: a colored vertex represents a component of a molecule, a vertex attribute represents the internal state...
Nathan W. Lemons, Bin Hu, William S. Hlavacek
NAR
2011
203views Computer Vision» more  NAR 2011»
14 years 1 months ago
ViralZone: a knowledge resource to understand virus diversity
The molecular diversity of viruses complicates the interpretation of viral genomic and proteomic data. To make sense of viral gene functions, investigators must be familiar with t...
Chantal Hulo, Edouard De Castro, Patrick Masson, L...
BMCBI
2007
99views more  BMCBI 2007»
14 years 11 months ago
Towards validating the hypothesis of phylogenetic profiling
Background: As the number of fully sequenced genome increases, the need is greater for bioinformatics to predict or annotate genes of a newly sequenced genome. Ever since Eisenber...
Raja Loganantharaj, Mazen Atwi
ESOP
2009
Springer
15 years 5 months ago
Amortised Memory Analysis Using the Depth of Data Structures
Hofmann and Jost have presented a heap space analysis [1] that finds linear space bounds for many functional programs. It uses an amortised analysis: assigning hypothetical amount...
Brian Campbell
BMCBI
2010
112views more  BMCBI 2010»
14 years 11 months ago
PhenoFam-gene set enrichment analysis through protein structural information
Background: With the current technological advances in high-throughput biology, the necessity to develop tools that help to analyse the massive amount of data being generated is e...
Maciej Paszkowski-Rogacz, Mikolaj Slabicki, M. Ter...