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» XML schemas for common bioinformatic data types and their ap...
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BMCBI
2006
87views more  BMCBI 2006»
13 years 6 months ago
XML schemas for common bioinformatic data types and their application in workflow systems
Background: Today, there is a growing need in bioinformatics to combine available software tools into chains, thus building complex applications from existing single-task tools. T...
Philipp N. Seibel, Jan Krüger, Sven Hartmeier...
DILS
2007
Springer
14 years 9 days ago
Bioinformatics Service Reconciliation by Heterogeneous Schema Transformation
This paper focuses on the problem of bioinformatics service reconciliation in a generic and scalable manner so as to enhance interoperability in a highly evolving field. Using XML...
Lucas Zamboulis, Nigel J. Martin, Alexandra Poulov...
BMCBI
2007
177views more  BMCBI 2007»
13 years 6 months ago
Biowep: a workflow enactment portal for bioinformatics applications
Background: The huge amount of biological information, its distribution over the Internet and the heterogeneity of available software tools makes the adoption of new data integrat...
Paolo Romano 0001, Ezio Bartocci, Guglielmo Bertol...
HPDC
2010
IEEE
13 years 7 months ago
Data parallelism in bioinformatics workflows using Hydra
Large scale bioinformatics experiments are usually composed by a set of data flows generated by a chain of activities (programs or services) that may be modeled as scientific work...
Fábio Coutinho, Eduardo S. Ogasawara, Danie...
EDBT
2008
ACM
124views Database» more  EDBT 2008»
14 years 6 months ago
Scalable XQuery type matching
XML Schema awareness has been an integral part of the XQuery language since its early design stages. Matching XML data against XML types is the main operation that backs up XQuery...
Jens Teubner