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BMCBI
2010
98views more  BMCBI 2010»
14 years 9 months ago
An optimized TOPS+ comparison method for enhanced TOPS models
nd: Although methods based on highly abstract descriptions of protein structures, such as VAST and TOPS, can perform very fast protein structure comparison, the results can lack a...
Mallika Veeramalai, David Gilbert, Gabriel Valient...
SEMWEB
2009
Springer
15 years 2 months ago
DOGMA: A Disk-Oriented Graph Matching Algorithm for RDF Databases
RDF is an increasingly important paradigm for the representation of information on the Web. As RDF databases increase in size to approach tens of millions of triples, and as sophis...
Matthias Bröcheler, Andrea Pugliese, V. S. Su...
CIKM
2008
Springer
14 years 11 months ago
Book search: indexing the valuable parts
With massive book digitization efforts underway, there is a need for developing effective book retrieval strategies. This paper explores the relative contribution of different par...
Walid Magdy, Kareem Darwish
BMCBI
2008
119views more  BMCBI 2008»
14 years 9 months ago
Snagger: A user-friendly program for incorporating additional information for tagSNP selection
Background: There has been considerable effort focused on developing efficient programs for tagging single-nucleotide polymorphisms (SNPs). Many of these programs do not account f...
Christopher K. Edlund, Won H. Lee, Dalin Li, David...
BIOINFORMATICS
2012
13 years 2 days ago
Epigenetic priors for identifying active transcription factor binding sites
Motivation Accurate knowledge of the genome-wide binding of transcription factors in a particular cell type or under a particular condition is necessary for understanding transcri...
Gabriel Cuellar-Partida, Fabian A. Buske, Robert C...