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AICOM
2006
129views more  AICOM 2006»
14 years 9 months ago
A backjumping technique for Disjunctive Logic Programming
In this work we present a backjumping technique for Disjunctive Logic Programming (DLP) under the Answer Set Semantics. It builds upon related techniques that had originally been p...
Francesco Ricca, Wolfgang Faber, Nicola Leone
BMCBI
2006
119views more  BMCBI 2006»
14 years 9 months ago
A methodology for the structural and functional analysis of signaling and regulatory networks
Background: Structural analysis of cellular interaction networks contributes to a deeper understanding of network-wide interdependencies, causal relationships, and basic functiona...
Steffen Klamt, Julio Saez-Rodriguez, Jonathan A. L...
BMCBI
2006
146views more  BMCBI 2006»
14 years 9 months ago
Optimized Particle Swarm Optimization (OPSO) and its application to artificial neural network training
Background: Particle Swarm Optimization (PSO) is an established method for parameter optimization. It represents a population-based adaptive optimization technique that is influen...
Michael Meissner, Michael Schmuker, Gisbert Schnei...
BMCBI
2006
95views more  BMCBI 2006»
14 years 9 months ago
XcisClique: analysis of regulatory bicliques
Background: Modeling of cis-elements or regulatory motifs in promoter (upstream) regions of genes is a challenging computational problem. In this work, set of regulatory motifs si...
Amrita Pati, Cecilia Vasquez-Robinet, Lenwood S. H...
BMCBI
2006
179views more  BMCBI 2006»
14 years 9 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...