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ALGORITHMICA
2008
63views more  ALGORITHMICA 2008»
14 years 11 months ago
The Swap Edges of a Multiple-Sources Routing Tree
Let T be a spanning tree of a graph G and S V (G) be a set of sources. The routing cost of T is the total distance from all sources to all vertices. For an edge e of T, the swap ...
Bang Ye Wu, Chih-Yuan Hsiao, Kun-Mao Chao
ALGORITHMICA
2008
115views more  ALGORITHMICA 2008»
14 years 11 months ago
Algorithm Engineering for Color-Coding with Applications to Signaling Pathway Detection
Color-coding is a technique to design fixed-parameter algorithms for several NP-complete subgraph isomorphism problems. Somewhat surprisingly, not much work has so far been spent ...
Falk Hüffner, Sebastian Wernicke, Thomas Zich...
ALGORITHMICA
2008
82views more  ALGORITHMICA 2008»
14 years 11 months ago
Random Bichromatic Matchings
Given a graph with edges colored Red and Blue, we wish to sample and approximately count the number of perfect matchings with exactly k Red edges. We study a Markov chain on the sp...
Nayantara Bhatnagar, Dana Randall, Vijay V. Vazira...
ALGORITHMICA
2008
52views more  ALGORITHMICA 2008»
14 years 11 months ago
From Constrained to Unconstrained Maximum Agreement Subtree in Linear Time
We propose and study the Maximum Constrained Agreement Subtree (MCAST) problem, which is a variant of the classical Maximum Agreement Subtree (MAST) problem. Our problem allows us...
V. Berry, Z. S. Peng, H. F. Ting
ALGORITHMICA
2008
83views more  ALGORITHMICA 2008»
14 years 11 months ago
Inferring (Biological) Signal Transduction Networks via Transitive Reductions of Directed Graphs
In this paper we consider the p-ary transitive reduction (TRp) problem where p > 0 is an integer; for p = 2 this problem arises in inferring a sparsest possible (biological) sig...
Réka Albert, Bhaskar DasGupta, Riccardo Don...