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ICASSP
2011
IEEE
14 years 3 months ago
Biological pathway inference using manifold embedding
Disease occurs due to aberrant modulation of biological pathways. Identification of activated gene pathways from gene expression data is an important problem. In this work, we de...
Arvind Rao, Alfred O. Hero
BMCBI
2007
155views more  BMCBI 2007»
14 years 11 months ago
ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites
Background: In the last decade, techniques were established for the large scale genome-wide analysis of proteins, RNA, and metabolites, and database solutions have been developed ...
Jan Hummel, Michaela Niemann, Stefanie Wienkoop, W...
SIGMOD
2011
ACM
455views Database» more  SIGMOD 2011»
14 years 2 months ago
DBWiki: a structured wiki for curated data and collaborative data management
Wikis have proved enormously successful as a means to collaborate in the creation and publication of textual information. At the same time, a large number of curated databases hav...
Peter Buneman, James Cheney, Sam Lindley, Heiko M&...
SAC
2010
ACM
15 years 6 months ago
Web-based graphical querying of databases through an ontology: the Wonder system
Biological scientists have made large amounts of data available on the Web, which can be accessed by canned or precomputed queries presented via web forms. To satisfy further info...
Diego Calvanese, C. Maria Keet, Werner Nutt, Maria...