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» bdbms - A Database Management System for Biological Data
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102
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TAPIA
2009
ACM
15 years 6 months ago
A platform-based design environment for synthetic biological systems
Genomics has reached the stage at which the amount of DNA sequence information in existing databases is quite large. Synthetic biology is now using these databases to catalog sequ...
Douglas Densmore, Anne Van Devender, Matthew Johns...
BMCBI
2008
163views more  BMCBI 2008»
14 years 11 months ago
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Background: High-throughput genome biological experiments yield large and multifaceted datasets that require flexible and user-friendly analysis tools to facilitate their interpre...
Frédéric Chalmel, Michael Primig
BMCBI
2006
184views more  BMCBI 2006»
14 years 11 months ago
PathSys: integrating molecular interaction graphs for systems biology
Background: The goal of information integration in systems biology is to combine information from a number of databases and data sets, which are obtained from both high and low th...
Michael Baitaluk, Xufei Qian, Shubhada Godbole, Al...
77
Voted
VLDB
1995
ACM
91views Database» more  VLDB 1995»
15 years 3 months ago
A Data Transformation System for Biological Data Sources
Scientific data of importance to biologists in the Humitn Genome Project resides not only in conventional da.tabases, but in structured files maintained in a number of different f...
Peter Buneman, Susan B. Davidson, Kyle Hart, G. Ch...
ECCB
2005
IEEE
15 years 5 months ago
A query language for biological networks
Many areas of modern biology are concerned with the management, storage, visualization, comparison, and analysis of networks. For instance, networks are used to model signal trans...
Ulf Leser