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89
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CSB
2004
IEEE
113views Bioinformatics» more  CSB 2004»
15 years 4 months ago
Shannon Information in Complete Genomes
Shannon information in the genomes of all completely sequenced prokaryotes and eukaryotes are measured in word lengths of two to ten letters. It is found that in a scale-dependent...
Chang-Heng Chang, Li-Ching Hsieh, Ta-Yuan Chen, Ho...
74
Voted
CSB
2004
IEEE
109views Bioinformatics» more  CSB 2004»
15 years 4 months ago
Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as maximum parsimony (MP) and maximum likelihood (ML). Conventional MP heuristics for produc...
Usman Roshan, Bernard M. E. Moret, Tandy Warnow, T...
119
Voted
WABI
2004
Springer
106views Bioinformatics» more  WABI 2004»
15 years 5 months ago
Suboptimal Local Alignments Across Multiple Scoring Schemes
Abstract. Sequence alignment algorithms have a long standing tradition in bioinformatics. In this paper, we formulate an extension to existing local alignment algorithms: local ali...
Morris Michael, Christoph Dieterich, Jens Stoye
104
Voted
BMCBI
2004
104views more  BMCBI 2004»
15 years 10 days ago
Discriminative topological features reveal biological network mechanisms
Background: Recent genomic and bioinformatic advances have motivated the development of numerous network models intending to describe graphs of biological, technological, and soci...
Manuel Middendorf, Etay Ziv, Carter Adams, Jen Hom...
101
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BIOINFORMATICS
2005
134views more  BIOINFORMATICS 2005»
15 years 11 days ago
Outcome signature genes in breast cancer: is there a unique set?
Motivation: direct bearing whose expres Sorlie et al., 2 gene sets is a diseases (Lossos et al., 2004; Miklos and Maleszka, 2004), and the variables that could account questions i...
Liat Ein-Dor, Itai Kela, Gad Getz, David Givol, Ey...