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2004
Springer
15 years 5 months ago
Learning from General Label Constraints
Most machine learning algorithms are designed either for supervised or for unsupervised learning, notably classification and clustering. Practical problems in bioinformatics and i...
Tijl De Bie, Johan A. K. Suykens, Bart De Moor
WABI
2004
Springer
15 years 5 months ago
Reconstructing Ancestral Gene Orders Using Conserved Intervals
Conserved intervals were recently introduced as a measure of similarity between genomes whose genes have been shuffled during evolution by genomic rearrangements. Phylogenetic reco...
Anne Bergeron, Mathieu Blanchette, Annie Chateau, ...
WABI
2004
Springer
107views Bioinformatics» more  WABI 2004»
15 years 5 months ago
Phylogenetic Super-networks from Partial Trees
—In practice, one is often faced with incomplete phylogenetic data, such as a collection of partial trees or partial splits. This paper poses the problem of inferring a phylogene...
Daniel H. Huson, Tobias Dezulian, Tobias H. Kl&oum...
98
Voted
WABI
2004
Springer
15 years 5 months ago
Local Search Heuristic for Rigid Protein Docking
Abstract. We give an algorithm that locally improves the fit between two proteins modeled as space-filling diagrams. The algorithm defines the fit in purely geometric terms and...
Vicky Choi, Pankaj K. Agarwal, Herbert Edelsbrunne...
99
Voted
WABI
2004
Springer
15 years 5 months ago
Chaining Algorithms for Alignment of Draft Sequence
Abstract. In this paper we propose a chaining method that can align a draft genomic sequence against a finished genome. We introduce the use of an overlap tree to enhance the state...
Mukund Sundararajan, Michael Brudno, Kerrin Small,...