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DNA
2005
Springer
130views Bioinformatics» more  DNA 2005»
15 years 3 months ago
An Algorithm for SAT Without an Extraction Phase
An algorithm that could be implemented at a molecular level for solving the satisfiability of Boolean expressions is presented. This algorithm, based on properties of specific se...
Pierluigi Frisco, Christiaan Henkel, Szabolcs Teng...
CSB
2005
IEEE
223views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Automatic Protein Function Annotation through Candidate Ortholog Clusters from Incomplete Genomes
Annotation of protein function often arises in the context of partially complete genomes but is not adequately addressed. We present an annotation method by extracting ortholog cl...
Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muc...
CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
15 years 3 months ago
EigenPhenotypes: Towards an Algorithmic Framework for Phenotype Discovery
Studying the genetic control of molecular, anatomical and/or morphological phenotypes in model organisms is a powerful tool in the functional analysis of a gene. The goal of our r...
Alexander Vaughan, Rahul Singh, Ilmi Yoon, Megumi ...
CSB
2005
IEEE
124views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Multi-Scale Hierarchical Structure Prediction of Helical Transmembrane Proteins
As the first step toward a multi-scale, hierarchical computational approach for membrane protein structure prediction, the packing of transmembrane helices was modeled at the resi...
Zhong Chen, Ying Xu
CSB
2005
IEEE
180views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Functional Modularity in a Large-Scale Mammalian Molecular Interaction Network
The Ingenuity™ Pathways Knowledge Base (IPKB) contains over one million findings manually curated from the scientific literature. Highly-structured content from the IPKB forms...
Andreas Kramer, Daniel R. Richards, James O. Bowlb...