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CSB
2005
IEEE
129views Bioinformatics» more  CSB 2005»
15 years 3 months ago
ssahaSNP A Polymorphism Detection Tool on a Whole Genome Scale
We present a software package which can detect homozygous SNPs and indels on a eukaryotic genome scale from millions of shotgun reads. Matching seeds of a few kmer words are found...
Zemin Ning, Mario Cáccamo, James C. Mulliki...
CSB
2005
IEEE
133views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Choosing SNPs Using Feature Selection
A major challenge for genomewide disease association studies is the high cost of genotyping large number of single nucleotide polymorphisms (SNP). The correlations between SNPs, h...
Tu Minh Phuong, Zhen Lin, Russ B. Altman
CSB
2005
IEEE
133views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Investigation into Biomedical Literature Classification Using Support Vector Machines
Specific topic search in the PubMed Database, one of the most important information resources for scientific community, presents a big challenge to the users. The researcher typic...
Nalini Polavarapu, Shamkant B. Navathe, Ramprasad ...
CSB
2005
IEEE
136views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Computational Method for Temporal Pattern Discovery in Biomedical Genomic Databases
With the rapid growth of biomedical research databases, opportunities for scientific inquiry have expanded quickly and led to a demand for computational methods that can extract b...
Mohammed I. Rafiq, Martin J. O'Connor, Amar K. Das
CSB
2005
IEEE
118views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Gene Teams with Relaxed Proximity Constraint
Functionally related genes co-evolve, probably due to the strong selection pressure in evolution. Thus we expect that they are present in multiple genomes. Physical proximity amon...
Sun Kim, Jeong-Hyeon Choi, Jiong Yang