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JUCS
2000
91views more  JUCS 2000»
14 years 9 months ago
Syntax, Parsing and Production of Natural Language in a Framework of Information Compression by Multiple Alignment, Unification
This article introduces the idea that information compression by multiple alignment, unification and search (ICMAUS) provides a framework within which natural language syntax may ...
J. Gerard Wolff
BMCBI
2006
130views more  BMCBI 2006»
14 years 10 months ago
An interactive visualization tool to explore the biophysical properties of amino acids and their contribution to substitution ma
Background: Quantitative descriptions of amino acid similarity, expressed as probabilistic models of evolutionary interchangeability, are central to many mainstream bioinformatic ...
Blazej Bulka, Marie desJardins, Stephen J. Freelan...
BMCBI
2006
154views more  BMCBI 2006»
14 years 10 months ago
Agile methods in biomedical software development: a multi-site experience report
Background: Agile is an iterative approach to software development that relies on strong collaboration and automation to keep pace with dynamic environments. We have successfully ...
David W. Kane, Moses M. Hohman, Ethan G. Cerami, M...
BMCBI
2006
113views more  BMCBI 2006»
14 years 10 months ago
GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima
Background: Computational discovery of transcription factor binding sites (TFBS) is a challenging but important problem of bioinformatics. In this study, improvement of a Gibbs sa...
Kazuhito Shida
IJCNN
2006
IEEE
15 years 4 months ago
A Heuristic for Free Parameter Optimization with Support Vector Machines
— A heuristic is proposed to address free parameter selection for Support Vector Machines, with the goals of improving generalization performance and providing greater insensitiv...
Matthew Boardman, Thomas P. Trappenberg