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NAR
2007
102views more  NAR 2007»
14 years 9 months ago
ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ
The wealth of transcript information that has been made publicly available in recent years has led to large pools of individual web sites offering access to bioinformatics softwar...
Coral del Val, Peter Ernst, Mechthild Falkenhahn, ...
JCC
2010
105views more  JCC 2010»
14 years 8 months ago
Fast determination of the optimal rotational matrix for macromolecular superpositions
: Finding the rotational matrix that minimizes the sum of squared deviations between two vectors is an important problem in bioinformatics and crystallography. Traditional algorith...
Pu Liu, Dimitris K. Agrafiotis, Douglas L. Theobal...
BIBE
2006
IEEE
119views Bioinformatics» more  BIBE 2006»
15 years 4 months ago
Large Grain Size Stochastic Optimization Alignment
DNA sequence alignment is a critical step in identifying homology between organisms. The most widely used alignment program, ClustalW, is known to suffer from the local minima pro...
Perry Ridge, Hyrum Carroll, Dan Sneddon, Mark J. C...
BMCBI
2006
121views more  BMCBI 2006»
14 years 10 months ago
Robust computational reconstitution - a new method for the comparative analysis of gene expression in tissues and isolated cell
Background: Biological tissues consist of various cell types that differentially contribute to physiological and pathophysiological processes. Determining and analyzing cell type-...
Martin Hoffmann, Dirk Pohlers, Dirk Koczan, Hans-J...
BMCBI
2006
126views more  BMCBI 2006»
14 years 10 months ago
JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow
Background: Expressed sequence tag (EST) analyses provide a rapid and economical means to identify candidate genes that may be involved in a particular biological process. These E...
Mariano Latorre, Herman Silva, Juan Saba, Carito G...