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BMCBI
2008
106views more  BMCBI 2008»
14 years 9 months ago
Integrating biological data - the Distributed Annotation System
Background: The Distributed Annotation System (DAS) is a widely adopted protocol for dynamically integrating a wide range of biological data from geographically diverse sources. D...
Andrew M. Jenkinson, Mario Albrecht, Ewan Birney, ...
BMCBI
2008
110views more  BMCBI 2008»
14 years 9 months ago
Assessment of composite motif discovery methods
Background: Computational discovery of regulatory elements is an important area of bioinformatics research and more than a hundred motif discovery methods have been published. Tra...
Kjetil Klepper, Geir Kjetil Sandve, Osman Abul, Jo...
CLEIEJ
2006
97views more  CLEIEJ 2006»
14 years 9 months ago
Prediction of RNA Pseudoknotted Secondary Structure using Stochastic Context Free Grammars (SCFG)
Pseudoknots are a frequent RNA structure that assumes essential roles for varied biocatalyst cell's functions. One of the most challenging fields in bioinformatics is the pre...
Rafael Garcia
NAR
2008
223views more  NAR 2008»
14 years 9 months ago
AtPID: Arabidopsis thaliana protein interactome database - an integrative platform for plant systems biology
Arabidopsis thaliana Protein Interactome Database (AtPID) is an object database that integrates data from several bioinformatics prediction methods and manually collected informat...
Jian Cui, Peng Li, Guang Li, Feng Xu, Chen Zhao, Y...
BIBM
2008
IEEE
145views Bioinformatics» more  BIBM 2008»
15 years 4 months ago
Identifying Interface Elements Implied in Protein-Protein Interactions Using Statistical Tests and Frequent Item Sets
Understanding what are the characteristics of proteinprotein interfaces is at the core of numerous applications. This paper introduces a method in which the proteins are described...
Christine Martin, Antoine Cornuéjols