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BMCBI
2004
97views more  BMCBI 2004»
14 years 10 months ago
Calibration and assessment of channel-specific biases in microarray data with extended dynamical range
Background: Non-linearities in observed log-ratios of gene expressions, also known as intensity dependent log-ratios, can often be accounted for by global biases in the two channe...
Henrik Bengtsson, Göran Jönsson, Johan V...
BMCBI
2004
85views more  BMCBI 2004»
14 years 10 months ago
Frequent occurrence of recognition Site-like sequences in the restriction endonucleases
Background: There are two different theories about the development of the genetic code. Woese suggested that it was developed in connection with the amino acid repertoire, while C...
Jan C. Biro, Josephine M. K. Biro
BMCBI
2004
83views more  BMCBI 2004»
14 years 10 months ago
SUPFAM: A database of sequence superfamilies of protein domains
Background: SUPFAM database is a compilation of superfamily relationships between protein domain families of either known or unknown 3-D structure. In SUPFAM, sequence families fr...
Shashi B. Pandit, Rana Bhadra, V. S. Gowri, S. Bal...
BMCBI
2004
89views more  BMCBI 2004»
14 years 10 months ago
Network analysis of metabolic enzyme evolution in Escherichia coli
Background: The two most common models for the evolution of metabolism are the patchwork evolution model, where enzymes are thought to diverge from broad to narrow substrate speci...
Sara Light, Per Kraulis
BMCBI
2004
91views more  BMCBI 2004»
14 years 10 months ago
Improved hit criteria for DNA local alignment
The hit criterion is a key component of heuristic local alignment algorithms. It specifies a class of patterns assumed to witness a potential similarity, and this choice is decisi...
Laurent Noé, Gregory Kucherov