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BMCBI
2004
114views more  BMCBI 2004»
14 years 10 months ago
Analysis of superfamily specific profile-profile recognition accuracy
Background: Annotation of sequences that share little similarity to sequences of known function remains a major obstacle in genome annotation. Some of the best methods of detectin...
James A. Casbon, Mansoor A. S. Saqi
BMCBI
2004
79views more  BMCBI 2004»
14 years 10 months ago
A new mixture model approach to analyzing allelic-loss data using Bayes factors
Background: Allelic-loss studies record data on the loss of genetic material in tumor tissue relative to normal tissue at various loci along the genome. As the deletion of a tumor...
Manisha Desai, Mary J. Emond
BMCBI
2004
90views more  BMCBI 2004»
14 years 10 months ago
Haplotype frequency estimation error analysis in the presence of missing genotype data
Background: Increasingly researchers are turning to the use of haplotype analysis as a tool in population studies, the investigation of linkage disequilibrium, and candidate gene ...
Enda D. Kelly, Fabian Sievers, Ross McManus
BMCBI
2004
119views more  BMCBI 2004»
14 years 10 months ago
PASS2: an automated database of protein alignments organised as structural superfamilies
Background: The functional selection and three-dimensional structural constraints of proteins in nature often relates to the retention of significant sequence similarity between p...
Anirban Bhaduri, Ganesan Pugalenthi, Ramanathan So...
BMCBI
2004
77views more  BMCBI 2004»
14 years 10 months ago
Graphical technique for identifying a monotonic variance stabilizing transformation for absolute gene intensity signals
Background: The usefulness of log2 transformation for cDNA microarray data has led to its widespread application to Affymetrix data. For Affymetrix data, where absolute intensitie...
Kellie J. Archer, Catherine I. Dumur, Viswanathan ...