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    BMCBI
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    Measuring similarities between transcription factor binding sites
    15 years 10 days ago
    Measuring similarities between transcription factor binding sites
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    Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
    Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
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    BMCBI
    2005
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    Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"
    15 years 10 days ago
    Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"
    Download  www.biomedcentral.com
    Background: The genomes of prokaryotes and lower eukaryotes display a very strong 11 bp periodic bias in the distribution of their nucleotides. This bias is present throughout a g...
    Etienne Larsabal, Antoine Danchin
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    BMCBI
    2005
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    Principal component analysis for predicting transcription-factor binding motifs from array-derived data
    15 years 10 days ago
    Principal component analysis for predicting transcription-factor binding motifs from array-derived data
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    Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
    Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
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    BMCBI
    2005
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    PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability
    15 years 10 days ago
    PSI-BLAST-ISS: an intermediate sequence search tool for estimation of the position-specific alignment reliability
    Download  www.biomedcentral.com
    Background: Protein sequence alignments have become indispensable for virtually any evolutionary, structural or functional study involving proteins. Modern sequence search and com...
    Mindaugas Margelevicius, Ceslovas Venclovas
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    BMCBI
    2005
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    PREP-Mt: predictive RNA editor for plant mitochondrial genes
    15 years 10 days ago
    PREP-Mt: predictive RNA editor for plant mitochondrial genes
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    Background: In plants, RNA editing is a process that converts specific cytidines to uridines and uridines to cytidines in transcripts from virtually all mitochondrial protein-codi...
    Jeffrey P. Mower
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