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BMCBI
2010
71views more  BMCBI 2010»
14 years 7 months ago
High-throughput sequencing of the DBA/2J mouse genome
Xusheng Wang, Richa Agarwala, John A. Capra, Zugen...
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BMCBI
2010
135views more  BMCBI 2010»
14 years 10 months ago
MrsRF: an efficient MapReduce algorithm for analyzing large collections of evolutionary trees
Background: MapReduce is a parallel framework that has been used effectively to design largescale parallel applications for large computing clusters. In this paper, we evaluate th...
Suzanne Matthews, Tiffani L. Williams
BMCBI
2010
80views more  BMCBI 2010»
14 years 10 months ago
An ontology-based search engine for protein-protein interactions
Background: Keyword matching or ID matching is the most common searching method in a large database of protein-protein interactions. They are purely syntactic methods, and retriev...
Byungkyu Park, Kyungsook Han
BMCBI
2010
94views more  BMCBI 2010»
14 years 10 months ago
A comparative study of conservation and variation scores
Background: Conservation and variation scores are used when evaluating sites in a multiple sequence alignment, in order to identify residues critical for structure or function. A ...
Fredrik Johansson, Hiroyuki Toh
BMCBI
2010
133views more  BMCBI 2010»
14 years 10 months ago
Learning an enriched representation from unlabeled data for protein-protein interaction extraction
Background: Extracting protein-protein interactions from biomedical literature is an important task in biomedical text mining. Supervised machine learning methods have been used w...
Yanpeng Li, Xiaohua Hu, Hongfei Lin, Zhihao Yang