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104
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ICPR
2008
IEEE
16 years 5 months ago
Fast protein homology and fold detection with sparse spatial sample kernels
In this work we present a new string similarity feature, the sparse spatial sample (SSS). An SSS is a set of short substrings at specific spatial displacements contained in the or...
Pai-Hsi Huang, Pavel P. Kuksa, Vladimir Pavlovic
153
Voted
SDM
2008
SIAM
157views Data Mining» more  SDM 2008»
15 years 5 months ago
ROC-tree: A Novel Decision Tree Induction Algorithm Based on Receiver Operating Characteristics to Classify Gene Expression Data
Gene expression information from microarray experiments is a primary form of data for biological analysis and can offer insights into disease processes and cellular behaviour. Suc...
M. Maruf Hossain, Md. Rafiul Hassan, James Bailey
155
Voted
NIPS
2008
15 years 5 months ago
Semi-supervised Learning with Weakly-Related Unlabeled Data: Towards Better Text Categorization
The cluster assumption is exploited by most semi-supervised learning (SSL) methods. However, if the unlabeled data is merely weakly related to the target classes, it becomes quest...
Liu Yang, Rong Jin, Rahul Sukthankar
BMCBI
2008
133views more  BMCBI 2008»
15 years 3 months ago
LocateP: Genome-scale subcellular-location predictor for bacterial proteins
Background: In the past decades, various protein subcellular-location (SCL) predictors have been developed. Most of these predictors, like TMHMM 2.0, SignalP 3.0, PrediSi and Phob...
Miaomiao Zhou, Jos Boekhorst, Christof Francke, Ro...
91
Voted
BMCBI
2008
71views more  BMCBI 2008»
15 years 3 months ago
Examining the significance of fingerprint-based classifiers
Background: Experimental examinations of biofluids to measure concentrations of proteins or their fragments or metabolites are being explored as a means of early disease detection...
Brian T. Luke, Jack R. Collins