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IPPS
2003
IEEE
15 years 3 months ago
A Fast Algorithm for the Exhaustive Analysis of 12-Nucleotide-Long DNA Sequences. Applications to Human Genomics
We have developed a new algorithm that allows the exhaustive determination of words of up to 12 nucleotides in DNA sequences. It is fast enough as to be used at a genomic scale ru...
Vicente Arnau, Ignacio Marín
94
Voted
IPPS
2003
IEEE
15 years 3 months ago
ECO: An Empirical-Based Compilation and Optimization System
In this paper, we describe a compilation system that automates much of the process of performance tuning that is currently done manually by application programmers interested in h...
Nastaran Baradaran, Jacqueline Chame, Chun Chen, P...
IPPS
2003
IEEE
15 years 3 months ago
An Implicitly Parallel Object-Oriented Matrix Library and its Application to Medical Physics
We introduce VLADYMIR, a matrix library that permits the development of array-based code in C++. It is especially useful for numerical simulation tasks and parallelises automatical...
Jonas Lätt, Bastien Chopard
90
Voted
IPPS
2003
IEEE
15 years 3 months ago
A Web Service-Based Experiment Management System for the Grid
We have developed the ZENTURIO experiment management system for performance studies, parameter studies, and software testing of parallel applications on cluster and Grid architect...
Radu Prodan, Thomas Fahringer
ISCA
2003
IEEE
88views Hardware» more  ISCA 2003»
15 years 3 months ago
Phase Tracking and Prediction
In a single second a modern processor can execute billions of instructions. Obtaining a bird’s eye view of the behavior of a program at these speeds can be a difficult task whe...
Timothy Sherwood, Suleyman Sair, Brad Calder