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NC
2007
123views Neural Networks» more  NC 2007»
14 years 9 months ago
The complexity of latching transitions in large scale cortical networks
Abstract. We study latching dynamics, i.e. the ability of a network to hop spontaneously from one discrete attractor state to another, which has been proposed as a model of an inï¬...
Emilio Kropff, Alessandro Treves
BMCBI
2004
196views more  BMCBI 2004»
14 years 9 months ago
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
Background: In a previous paper, we introduced MUSCLE, a new program for creating multiple alignments of protein sequences, giving a brief summary of the algorithm and showing MUS...
Robert C. Edgar
ISAAC
2007
Springer
183views Algorithms» more  ISAAC 2007»
15 years 4 months ago
The Complexity of Finding Subgraphs Whose Matching Number Equals the Vertex Cover Number
The class of graphs where the size of a minimum vertex cover equals that of a maximum matching is known as K¨onig-Egerv´ary graphs. K¨onig-Egerv´ary graphs have been studied ex...
Sounaka Mishra, Venkatesh Raman, Saket Saurabh, So...
BIBE
2007
IEEE
149views Bioinformatics» more  BIBE 2007»
15 years 1 months ago
XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes
Multi-state molecules and multi-component complexes are commonly involved in cellular signaling. Accounting for molecules that have multiple potential states, such as a protein tha...
Michael L. Blinov, Ion I. Moraru
BMCBI
2006
122views more  BMCBI 2006»
14 years 10 months ago
A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks
Background:Receptors and scaffold proteins possess a number of distinct domains and bind multiple partners. A common problem in modeling signaling systems arises from a combinator...
Holger Conzelmann, Julio Saez-Rodriguez, Thomas Sa...