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JCC
2011
87views more  JCC 2011»
15 years 1 months ago
NUPACK: Analysis and design of nucleic acid systems
: The Nucleic Acid Package (NUPACK) is a growing software suite for the analysis and design of nucleic acid systems. The NUPACK web server (http://www.nupack.org) currently enables...
Joseph N. Zadeh, Conrad Steenberg, Justin S. Bois,...
BMCBI
2010
202views more  BMCBI 2010»
15 years 6 months ago
NeMo: Network Module identification in Cytoscape
Background: As the size of the known human interactome grows, biologists increasingly rely on computational tools to identify patterns that represent protein complexes and pathway...
Corban G. Rivera, Rachit Vakil, Joel S. Bader
BMCBI
2010
115views more  BMCBI 2010»
15 years 6 months ago
CONAN: copy number variation analysis software for genome-wide association studies
Background: Genome-wide association studies (GWAS) based on single nucleotide polymorphisms (SNPs) revolutionized our perception of the genetic regulation of complex traits and di...
Lukas Forer, Sebastian Schönherr, Hansi Wei&s...
ALENEX
2010
117views Algorithms» more  ALENEX 2010»
15 years 7 months ago
Untangling the Braid: Finding Outliers in a Set of Streams
Monitoring the performance of large shared computing systems such as the cloud computing infrastructure raises many challenging algorithmic problems. One common problem is to trac...
Chiranjeeb Buragohain, Luca Foschini, Subhash Suri
AMW
2010
15 years 7 months ago
Generating XML/GML Schemas from Geographic Conceptual Schemas
Abstract. A large volume of data with complex structures is currently represented in GML (Geography Markup Language) for storing and exchanging geographic information. As the size ...
André C. Hora, Clodoveu A. Davis Jr., Mirel...