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JGAA
2006
100views more  JGAA 2006»
14 years 12 months ago
Orthogonal Hypergraph Drawing for Improved Visibility
Visualization of circuits is an important research area in electronic design automation. One commonly accepted method to visualize a circuit aligns the gates to layers and uses or...
Thomas Eschbach, Wolfgang Günther, Bernd Beck...
BMCBI
2004
154views more  BMCBI 2004»
14 years 11 months ago
Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments
Background: With ever increasing numbers of closely related virus genomes being sequenced, it has become desirable to be able to compare two genomes at a level more detailed than ...
Ryan Brodie, Alex J. Smith, Rachel L. Roper, Vasil...
BMCBI
2004
149views more  BMCBI 2004»
14 years 11 months ago
MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states
Background: Information obtained by DNA microarray technology gives a rough snapshot of the transcriptome state, i.e., the expression level of all the genes expressed in a cell po...
Gaëlle Lelandais, Philippe Marc, Pierre Vince...
BMCBI
2004
120views more  BMCBI 2004»
14 years 11 months ago
pdb-care (PDB CArbohydrate REsidue check): a program to support annotation of complex carbohydrate structures in PDB files
Background: Carbohydrates are involved in a variety of fundamental biological processes and pathological situations. They therefore have a large pharmaceutical and diagnostic pote...
Thomas Lütteke, Claus-Wilhelm von der Lieth
BMCBI
2004
150views more  BMCBI 2004»
14 years 11 months ago
Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
Background: The discovery of cis-regulatory modules in metazoan genomes is crucial for understanding the connection between genes and organism diversity. It is important to quanti...
Saurabh Sinha, Mark D. Schroeder, Ulrich Unnerstal...