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CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes
Searching genomes for RNA secondary structure with computational methods has become an important approach to the annotation of non-coding RNAs. However, due to the lack of effici...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fa...
CSB
2005
IEEE
202views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Head and Neck Cancer Metastasis Prediction via Artificial Neural Networks
Cancers in head and neck tends to spread to nearby lymph nodes. Lymph nodes trap the spreading tumor cells but then the tumor starts to grow in these nodes and then spread further...
Eveleen Darby, Tezeswari Nettimi, Shilpa Kodali, L...
CSB
2005
IEEE
135views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Relating transcription factors, modules of genes and cultivation conditions in Saccharomyces cerevisiae
Usually, the functionality of a module of co-expressed genes is derived from enrichment within the module of a particular gene annotation category. The systematic setup of the che...
Theo A. Knijnenburg, Marcel J. T. Reinders, J. M. ...
CSB
2005
IEEE
135views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Inverse Design of Large Molecules using Linear Diophantine Equations
We have previously developed a method [1] for the inverse design of small ligands. This method can be used to design novel compounds with optimized properties (such as drugs) and ...
Shawn Martin, W. Michael Brown, Jean-Loup Faulon, ...
CSB
2005
IEEE
167views Bioinformatics» more  CSB 2005»
15 years 3 months ago
SinicView: An Interactive Visualization Tool for Comparison of Multiple Sequence Alignment Results
In the initial stage of sequence analysis, a biologist is first faced with the questions about how to choose the best tool to align sequences of interest and how to analyze and v...
Arthur Chun-Chieh Shih, D. T. Lee, Laurent Lin, Ch...