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CSB
2005
IEEE
167views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Considerations in Making Microarray Cross-Platform Correlations
Comparison and integration of expression data derived from diverse microarray platforms is challenging. Factors affecting cross-platform comparison of microarray data include the ...
Manohar Kollegal, Sudeshna Adak, Richard Shippy, T...
CSB
2005
IEEE
124views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Identifying Local Gene Expression Patterns in Biomolecular Networks
This study is aimed at elucidating putative transcription regulators (TRs) responsible for the observed differential expression pattern. Combined direct promoter binding and indir...
Andrey Y. Sivachenko, Anton Yuryev, Nikolai Darase...
CSB
2005
IEEE
182views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Bacterial Whole Genome Phylogeny Using Proteome Comparison and Optimal Reversal Distance
Traditional phylogenetic tree reconstruction is based on point mutations of a single gene. This approach is hardly suitable for genomes whose genes are almost identical and hardly...
Noppadon Khiripet
CSB
2005
IEEE
141views Bioinformatics» more  CSB 2005»
15 years 3 months ago
A Parallel Algorithm for Clustering Protein-Protein Interaction Networks
The increasing availability of interaction graphs requires new resource-efficient tools capable of extracting valuable biological knowledge from these networks. In this paper we ...
Qiaofeng Yang, Stefano Lonardi
CSB
2005
IEEE
124views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Multi-Scale Hierarchical Structure Prediction of Helical Transmembrane Proteins
As the first step toward a multi-scale, hierarchical computational approach for membrane protein structure prediction, the packing of transmembrane helices was modeled at the resi...
Zhong Chen, Ying Xu