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DNA
2006
Springer
146views Bioinformatics» more  DNA 2006»
15 years 1 months ago
On Times to Compute Shapes in 2D Tile Self-assembly
We study the times to grow structures within the tile self-assembly model proposed by Winfree, and the possible shapes that can be achieved. Our earlier work was confined to the g...
Yuliy M. Baryshnikov, Edward G. Coffman Jr., Boons...
NC
2006
14 years 10 months ago
A DNA Superstructure-based Replicator without Product Inhibition
A monomer structure based on a hairpin loop is described that can be linked via short oligonucleotide sequences (linkers) to form polymers. Independence of linked monomers allow fo...
David Y. Zhang, Bernard Yurke
101
Voted
INFORMATICALT
2010
142views more  INFORMATICALT 2010»
14 years 8 months ago
Complexity Estimation of Genetic Sequences Using Information-Theoretic and Frequency Analysis Methods
The genetic information in cells is stored in DNA sequences, represented by a string of four letters, each corresponding to a definite type of nucleotides. Genomic DNA sequences a...
Robertas Damasevicius
89
Voted
BMCBI
2006
86views more  BMCBI 2006»
14 years 10 months ago
MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
Background: Non-coding DNA sequences comprise a very large proportion of the total genomic content of mammals, most other vertebrates, many invertebrates, and most plants. Unravel...
Jun Wang, Peter D. Keightley, Toby Johnson
NAR
2006
76views more  NAR 2006»
14 years 10 months ago
CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments
We present an online server that generates a 3D representation of properties of user-submitted RNA or DNA alignments. The visualized properties are information of single alignment...
Eckart Bindewald, Thomas D. Schneider, Bruce A. Sh...