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BMCBI
2006
116views more  BMCBI 2006»
14 years 10 months ago
Cluster analysis for DNA methylation profiles having a detection threshold
Background: DNA methylation, a molecular feature used to investigate tumor heterogeneity, can be measured on many genomic regions using the MethyLight technology. Due to the combi...
Paul Marjoram, Jing Chang, Peter W. Laird, Kimberl...
IJFCS
2007
111views more  IJFCS 2007»
14 years 10 months ago
Involutively Bordered Words
In this paper we study a generalization of the classical notions of bordered and unbordered words, motivated by DNA computing. DNA strands can be viewed as finite strings over th...
Lila Kari, Kalpana Mahalingam
IROS
2006
IEEE
96views Robotics» more  IROS 2006»
15 years 4 months ago
Topological Mapping Inspired by Techniques in DNA Sequence Alignment
Abstract— This paper introduces a method of building topological maps using sequences of images and the approximate string matching algorithm, which is commonly used in DNA seque...
Alan M. Zhang, Lindsay Kleeman, R. Andrew Russell
BIOCOMP
2006
14 years 11 months ago
Filtering Tandem Repeats in DNA Sequences
A tandem repeat is a sequence of two or more contiguous, approximate copies of a pattern. Tandem repeats occur in the genomes of both eukaryotic and prokaryotic organisms. They ar...
Dina Sokol, Justin Tojeira
BIOCOMP
2006
14 years 11 months ago
Melting Free Energies of DNA Duplexes with oxidized Base Residues and Abasic sites: A Molecular Dynamics Characterization
: Ionizing radiation alters DNA strands and mainly creates multiply damaged sites (MDS), e.g. two or more damaged sites within one or two turns of the DNA (10 to 20 base pairs). Th...
Latifa Douali, Matt Ernst, John Miller, Michel Dup...