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BMCBI
2006
130views more  BMCBI 2006»
14 years 10 months ago
Spatial normalization of array-CGH data
Background: Array-based comparative genomic hybridization (array-CGH) is a recently developed technique for analyzing changes in DNA copy number. As in all microarray analyses, no...
Pierre Neuvial, Philippe Hupé, Isabel Brito...
IJFCS
2006
91views more  IJFCS 2006»
14 years 10 months ago
Bit-parallel Computation of Local Similarity Score Matrices with Unitary Weights
Abstract. Local similarity computation between two sequences permits detecting all the relevant alignments present between subsequences thereof. A well-known dynamic programming al...
Heikki Hyyrö, Gonzalo Navarro
NAR
2006
59views more  NAR 2006»
14 years 10 months ago
GenDecoder: genetic code prediction for metazoan mitochondria
Although the majority of the organisms use the same genetic code to translate DNA, several variants have been described in a wide range of organisms, both in nuclear and organella...
Federico Abascal, Rafael Zardoya, David Posada
NAR
2006
86views more  NAR 2006»
14 years 10 months ago
ISfinder: the reference centre for bacterial insertion sequences
ISfinder (www-is.biotoul.fr) is a dedicated database for bacterial insertion sequences (ISs). It has superseded the Stanford reference center. One of its functions is to assign IS...
P. Siguier, J. Perochon, L. Lestrade, J. Mahillon,...
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PR
2006
116views more  PR 2006»
14 years 10 months ago
Shared farthest neighbor approach to clustering of high dimensionality, low cardinality data
Clustering algorithms are routinely used in biomedical disciplines, and are a basic tool in bioinformatics. Depending on the task at hand, there are two most popular options, the ...
Stefano Rovetta, Francesco Masulli