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ARC
2007
Springer
123views Hardware» more  ARC 2007»
15 years 1 months ago
Multiple Sequence Alignment Using Reconfigurable Computing
The alignment of multiple protein (or DNA) sequences is a current problem in Bioinformatics. ClustalW is the most popular heuristic algorithm for multiple sequence alignment. Pairw...
Carlos R. Erig Lima, Heitor S. Lopes, Maiko R. Mor...
WALCOM
2007
IEEE
109views Algorithms» more  WALCOM 2007»
14 years 10 months ago
Pattern Matching in Degenerate DNA/RNA Sequences
In this paper, we consider the pattern matching problem in DNA and RNA sequences where either the pattern or the text can be degenerate i.e. contain sets of characters. We present ...
M. Sohel Rahman, Costas S. Iliopoulos, Laurent Mou...
JCC
2008
85views more  JCC 2008»
14 years 9 months ago
Minimal molecular surfaces and their applications
Abstract: This article presents a novel concept, the minimal molecular surface (MMS), for the theoretical modeling of biomolecules. The MMS can be viewed as a result of the surface...
P. W. Bates, G. W. Wei, Shan Zhao
CORR
2007
Springer
81views Education» more  CORR 2007»
14 years 9 months ago
Faster exon assembly by sparse spliced alignment
Assembling a gene from candidate exons is an important problem in computational biology. Among the most successful approaches to this problem is spliced alignment, proposed by Gelf...
Alexandre Tiskin
59
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DAM
2007
60views more  DAM 2007»
14 years 9 months ago
Restricting SBH ambiguity via restriction enzymes
The expected number of n-base long sequences consistent with a given SBH spectrum grows exponentially with n, which severely limits the potential range of applicability of SBH even...
Steven Skiena, Sagi Snir