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BMCBI
2002
108views more  BMCBI 2002»
14 years 9 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy
BMCBI
2002
120views more  BMCBI 2002»
14 years 9 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
CPAIOR
2007
Springer
15 years 3 months ago
Cost-Bounded Binary Decision Diagrams for 0-1 Programming
Abstract. In recent work binary decision diagrams (BDDs) were introduced as a technique for postoptimality analysis for integer programming. In this paper we show that much smaller...
Tarik Hadzic, John N. Hooker
CVPR
2007
IEEE
15 years 11 months ago
Thermal Imaging of the Superficial Temporal Artery: An Arterial Pulse Recovery Model
We present a novel model1 for measurement of the arterial pulse from the Superficial Temporal Artery (STA) using passive thermal Infra Red (IR) sensors. The proposed approach has ...
Sergey Y. Chekmenev, Aly A. Farag, Edward A. Essoc...
CVPR
2007
IEEE
15 years 11 months ago
Trace Ratio vs. Ratio Trace for Dimensionality Reduction
A large family of algorithms for dimensionality reduction end with solving a Trace Ratio problem in the form of arg maxW Tr(WT SpW)/Tr(WT SlW)1 , which is generally transformed in...
Huan Wang, Shuicheng Yan, Dong Xu, Xiaoou Tang, Th...