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102
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BMCBI
2006
102views more  BMCBI 2006»
15 years 25 days ago
UVPAR: fast detection of functional shifts in duplicate genes
Background: The imprint of natural selection on gene sequences is often difficult to detect. A plethora of methods have been devised to detect genetic changes due to selective pro...
Vicente Arnau, Miguel Gallach, J. Ignasi Lucas, Ig...
81
Voted
BMCBI
2007
115views more  BMCBI 2007»
15 years 23 days ago
A novel, fast, HMM-with-Duration implementation - for application with a new, pattern recognition informed, nanopore detector
Background: Hidden Markov Models (HMMs) provide an excellent means for structure identification and feature extraction on stochastic sequential data. An HMM-with-Duration (HMMwD) ...
Stephen Winters-Hilt, Carl Baribault
BMCBI
2005
132views more  BMCBI 2005»
15 years 20 days ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
AFRICACRYPT
2011
Springer
14 years 4 months ago
Really Fast Syndrome-Based Hashing
Abstract. The FSB (fast syndrome-based) hash function was submitted to the SHA-3 competition by Augot, Finiasz, Gaborit, Manuel, and Sendrier in 2008, after preliminary designs pro...
Daniel J. Bernstein, Tanja Lange, Christiane Peter...
98
Voted
DAGSTUHL
2007
15 years 2 months ago
How Fast can be Algebraic Attacks on Block Ciphers?
In this paper we give a specification of a new block cipher that can be called the Courtois Toy Cipher (CTC). It is quite simple, and yet very much like any other known block ciph...
Nicolas Courtois