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    BMCBI
    2005
    190views more  BMCBI 2005»
    Species-specific analysis of protein sequence motifs using mutual information
    14 years 9 months ago
    Species-specific analysis of protein sequence motifs using mutual information
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    Background: Protein sequence motifs are by definition short fragments of conserved amino acids, often associated with a specific function. Accordingly protein sequence profiles de...
    Jan Hummel, Nima Keshvari, Wolfram Weckwerth, Joac...
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    BMCBI
    2005
    73views more  BMCBI 2005»
    An analysis of extensible modelling for functional genomics data
    14 years 9 months ago
    An analysis of extensible modelling for functional genomics data
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    Background: Several data formats have been developed for large scale biological experiments, using a variety of methodologies. Most data formats contain a mechanism for allowing e...
    Andrew R. Jones, Norman W. Paton
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    BMCBI
    2005
    136views more  BMCBI 2005»
    Automatic detection of false annotations via binary property clustering
    14 years 9 months ago
    Automatic detection of false annotations via binary property clustering
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    Background: Computational protein annotation methods occasionally introduce errors. Falsepositive (FP) errors are annotations that are mistakenly associated with a protein. Such f...
    Noam Kaplan, Michal Linial
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    BMCBI
    2005
    94views more  BMCBI 2005»
    Measuring similarities between transcription factor binding sites
    14 years 9 months ago
    Measuring similarities between transcription factor binding sites
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    Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
    Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
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    BMCBI
    2005
    132views more  BMCBI 2005»
    Kalign - an accurate and fast multiple sequence alignment algorithm
    14 years 9 months ago
    Kalign - an accurate and fast multiple sequence alignment algorithm
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    Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
    Timo Lassmann, Erik L. L. Sonnhammer
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