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IPPS
2006
IEEE
15 years 4 months ago
Bio-sequence database scanning on a GPU
Protein sequences with unknown functionality are often compared to a set of known sequences to detect functional similarities. Efficient dynamic programming algorithms exist for t...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Adrian Sc...
IPPS
2006
IEEE
15 years 4 months ago
Evaluating cooperative checkpointing for supercomputing systems
Cooperative checkpointing, in which the system dynamically skips checkpoints requested by applications at runtime, can exploit system-level information to improve performance and ...
Adam J. Oliner, Ramendra K. Sahoo
IPPS
2006
IEEE
15 years 4 months ago
Aligning traces for performance evaluation
For many performance analysis problems, the ability to reason across traces is invaluable. However, due to non-determinism in the OS and virtual machines, even two identical runs ...
Todd Mytkowicz, Amer Diwan, Matthias Hauswirth, Pe...
IPPS
2006
IEEE
15 years 4 months ago
Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L
The Replica Exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. Ho...
Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. P...
IPPS
2006
IEEE
15 years 4 months ago
Privacy-aware presence management in instant messaging systems
Information about online presence allows participants of instant messaging (IM) systems to determine whether their prospective communication partners will be able to answer their ...
Karsten Loesing, Markus Dorsch, Martin Grote, Knut...