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IPPS
2010
IEEE
14 years 8 months ago
Fast Smith-Waterman hardware implementation
The Smith-Waterman (SW) algorithm is one of the widely used algorithms for sequence alignment in computational biology. With the growing size of the sequence database, there is alw...
Zubair Nawaz, Koen Bertels, Huseyin Ekin Sumbul
IPPS
2010
IEEE
14 years 8 months ago
Analysis of durability in replicated distributed storage systems
In this paper, we investigate the roles of replication vs. repair to achieve durability in large-scale distributed storage systems. Specifically, we address the fundamental questio...
Sriram Ramabhadran, Joseph Pasquale
IPPS
2010
IEEE
14 years 8 months ago
Static macro data flow: Compiling global control into local control
Abstract--The expression of parallel codes through abstract, high-level specifications of global control and data flow can greatly simplify the task of creating large parallel prog...
Pritish Jetley, Laxmikant V. Kalé
IPPS
2010
IEEE
14 years 8 months ago
Scalability analysis of embarassingly parallel applications on large clusters
This work presents a scalability analysis of embarrassingly parallel applications running on cluster and multi-cluster machines. Several applications can be included in this catego...
Fabrício Alves Barbosa da Silva, Hermes Sen...
IPPS
2010
IEEE
14 years 8 months ago
How Algorithm Definition Language (ADL) improves the performance of SmartGridSolve applications
In this paper, we study the importance of languages for the specification of algorithms in high performance Grid computing. We present one such language, the Algorithm Definition ...
Michele Guidolin, Thomas Brady, Alexey L. Lastovet...