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JCC
2002
85views more  JCC 2002»
14 years 9 months ago
Efficiency of the multicanonical simulation method as applied to peptides of increasing size: The heptapeptide deltorphin
: The advantage of the multicanonical (MUCA) simulation method of Berg and coworkers over the conventional Metropolis method is in its ability to move a system effectively across e...
Fatih Yaar, Handan Arkin, Tarik Çelik, Bern...
JCC
2008
74views more  JCC 2008»
14 years 9 months ago
A study on orientation and absorption spectrum of interfacial molecules by using continuum model
Abstract: In this work, a numerical procedure based on the continuum model is developed and applied to the solvation energy for ground state and the spectral shift against the posi...
Jian-Yi Ma, Jing-Bo Wang, Xiang-Yuan Li, Yao Huang...
JCC
2006
78views more  JCC 2006»
14 years 9 months ago
Software news and updates carma: A molecular dynamics analysis program
: A computer program has been developed to aid the analysis of molecular dynamics trajectories. The program is tuned for macromolecular large-scale problems and supports features s...
Nicholas M. Glykos
JCC
2006
70views more  JCC 2006»
14 years 9 months ago
SG-0: A small standard grid for DFT quadrature on large systems
: We report the development of a new standard quadrature grid for DFT calculations. Standard Grid 0 (SG-0) is designed to be approximately half as large as, and to provide approxim...
Siu-Hung Chien, Peter M. W. Gill
JCC
2006
67views more  JCC 2006»
14 years 9 months ago
Heuristic molecular lipophilicity potential (HMLP): Lipophilicity and hydrophilicity of amino acid side chains
: Heuristic molecular lipophilicity potential (HMLP) is applied in the study of lipophilicity and hydrphilcity of 20 natural amino acids side chains. The HMLP parameters, surface a...
Qishi Du, Da-Peng Li, Wen-Zhang He, Kuo-Chen Chou