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NAR
2008
73views more  NAR 2008»
14 years 9 months ago
LocalMove: computing on-lattice fits for biopolymers
Given an input Protein Data Bank file (PDB) for a protein or RNA molecule, LocalMove is a web server that determines an on-lattice representation for the input biomolecule. The we...
Yann Ponty, R. Istrate, E. Porcelli, Peter Clote
NAR
2008
101views more  NAR 2008»
14 years 8 months ago
RNALogo: a new approach to display structural RNA alignment
Regulatory RNAs play essential roles in many essential biological processes, ranging from gene regulation to protein synthesis. This work presents a web-based tool, RNALogo, to cr...
Tzu-Hao Chang, Jorng-Tzong Horng, Hsien-Da Huang
NAR
2008
87views more  NAR 2008»
14 years 9 months ago
The CGView Server: a comparative genomics tool for circular genomes
The CGView Server generates graphical maps of circular genomes that show sequence features, base composition plots, analysis results and sequence similarity plots. Sequences can b...
Jason R. Grant, Paul Stothard
NAR
2008
152views more  NAR 2008»
14 years 9 months ago
PROMALS3D web server for accurate multiple protein sequence and structure alignments
Multiple sequence alignments are essential in computational sequence and structural analysis, with applications in homology detection, structure modeling, function prediction and ...
Jimin Pei, Ming Tang, Nick V. Grishin
NAR
2008
78views more  NAR 2008»
14 years 9 months ago
InParanoid 6: eukaryotic ortholog clusters with inparalogs
The InParanoid eukaryotic ortholog database (http://InParanoid.sbc.su.se/) has been updated to version 6 and is now based on 35 species. We collected all available `complete'...
Ann-Charlotte Berglund, Erik Sjölund, Gabriel...