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RECOMB
2005
Springer
15 years 9 months ago
Alignment of Optical Maps
We introduce a new scoring method for calculation of alignments of optical maps. Missing cuts, false cuts, and sizing errors present in optical maps are addressed by our alignment...
Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwar...
RECOMB
2005
Springer
15 years 9 months ago
RIBRA-An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem
We develop an iterative relaxation algorithm, called RIBRA, for NMR protein backbone assignment. RIBRA applies nearest neighbor and weighted maximum independent set algorithms to ...
Kuen-Pin Wu, Jia-Ming Chang, Jun-Bo Chen, Chi-Fon ...
RECOMB
2005
Springer
15 years 9 months ago
Comparison of Protein-Protein Interaction Confidence Assignment Schemes
Recent technological advances have enabled high-throughput measurements of protein-protein interactions in the cell, producing protein interaction networks for various species at a...
Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded S...
RECOMB
2005
Springer
15 years 2 months ago
Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels
Phenotypic differences between closely-related species may arise from differential expression regimes, rather than different gene complements. Knowledge of cellular protein levels ...
Orna Man, Joel L. Sussman, Yitzhak Pilpel
RECOMB
2003
Springer
15 years 9 months ago
Designing seeds for similarity search in genomic DNA
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
Jeremy Buhler, Uri Keich, Yanni Sun