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RECOMB
2010
Springer
15 years 8 months ago
Automated High-Dimensional Flow Cytometric Data Analysis
Saumyadipta Pyne, Xinli Hu, Kui Wang, Elizabeth Ro...
RECOMB
2010
Springer
15 years 8 months ago
Alignment-Free Phylogenetic Reconstruction
We introduce the first polynomial-time phylogenetic reconstruction algorithm under a model of sequence evolution allowing insertions and deletions—or indels. Given appropriate ...
Constantinos Daskalakis, Sébastien Roch
RECOMB
2010
Springer
15 years 11 days ago
Consistency of Sequence-Based Gene Clusters
In comparative genomics, various combinatorial models can be used to specify gene clusters — groups of genes that are co-located in a set of genomes. Several approaches have been...
Roland Wittler, Jens Stoye
RECOMB
2010
Springer
14 years 12 months ago
Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps
Chaining fragments is a crucial step in genome alignment. Existing chaining algorithms compute a maximum weighted chain with no overlaps allowed between adjacent fragments. In prac...
Raluca Uricaru, Alban Mancheron, Eric Rivals
RECOMB
2010
Springer
15 years 11 days ago
An Approximation Algorithm for Computing a Parsimonious First Speciation in the Gene Duplication Model
We consider the following problem: given a forest of gene family trees on a set of genomes, find a first speciation which splits these genomes into two subsets and minimizes the ...
Aïda Ouangraoua, Krister M. Swenson, Cedric C...