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84
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SCFBM
2008
129views more  SCFBM 2008»
14 years 9 months ago
Faunus: An object oriented framework for molecular simulation
Background: We present a C++ class library for Monte Carlo simulation of molecular systems, including proteins in solution. The design is generic and highly modular, enabling mult...
Mikael Lund, Martin Trulsson, Björn Persson
99
Voted
SCFBM
2008
119views more  SCFBM 2008»
14 years 9 months ago
Boolean network simulations for life scientists
Modern life sciences research increasingly relies on computational solutions, from large scale data analyses to theoretical modeling. Within the theoretical models Boolean network...
István Albert, Juilee Thakar, Song Li, Ranr...
90
Voted
SCFBM
2008
738views more  SCFBM 2008»
14 years 9 months ago
Purposeful selection of variables in logistic regression
The main problem in any model-building situation is to choose from a large set of covariates those that should be included in the "best" model. A decision to keep a vari...
Zoran Bursac, C. Heath Gauss, David Keith Williams...
91
Voted
SCFBM
2008
87views more  SCFBM 2008»
14 years 9 months ago
Analysis by siRNA_profile program displays novel thermodynamic characteristics of highly functional siRNA molecules
Objective: Here we report the improved results of a new siRNA design program and analysis tool called siRNA_profile that reveals an additional criterion for bioinformatic search o...
Pirkko Muhonen, Ranga N. Parthasarathy, Anthony J....
86
Voted
SCFBM
2008
101views more  SCFBM 2008»
14 years 9 months ago
The MERG Suite: Tools for discovering competencies and associated learning resources
Background: As the demands for competency-based education grow, the need for standardsbased tools to allow for publishing and discovery of competency-based learning content is mor...
Ravi Teja Bhupatiraju, William R. Hersh, Valerie S...