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2011
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14 years 4 months ago
The effect of malformed tiles on tile assemblies within the kinetic tile assembly model
Many different constructions of proofreading tile sets have been proposed in the literature to reduce the effect of deviations from ideal behaviour of the dynamics of the molecular...
Ya Meng, Navin Kashyap
BMCBI
2011
14 years 4 months ago
Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies
Background: Next-generation sequencing technologies allow genomes to be sequenced more quickly and less expensively than ever before. However, as sequencing technology has improve...
Joshua Wetzel, Carl Kingsford, Mihai Pop
ASPLOS
2011
ACM
14 years 1 months ago
Mementos: system support for long-running computation on RFID-scale devices
Transiently powered computing devices such as RFID tags, kinetic energy harvesters, and smart cards typically rely on programs that complete a task under tight time constraints be...
Benjamin Ransford, Jacob Sorber, Kevin Fu
BMCBI
2011
14 years 1 months ago
Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing
Background: Next-generation sequencing (NGS) offers a unique opportunity for high-throughput genomics and has potential to replace Sanger sequencing in many fields, including de-n...
Mattia C. F. Prosperi, Luciano Prosperi, Alessandr...
BMCBI
2011
14 years 1 months ago
Estimation of allele frequency and association mapping using next-generation sequencing data
Background: Estimation of allele frequency is of fundamental importance in population genetic analyses and in association mapping. In most studies using next-generation sequencing...
Su Yeon Kim, Kirk E. Lohmueller, Anders Albrechtse...